Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs1100861 | chr6:35985543 | C/A | 0.000156 | 397 | 10.5 | 15.18 | 16.1 | KM Plot |
| LGG | rs1100862 | chr6:35985183 | T/C | 0.000156 | 397 | 10.5 | 15.18 | 16.1 | KM Plot |
| LGG | rs1100863 | chr6:35985121 | C/T | 0.000156 | 397 | 10.5 | 15.18 | 16.1 | KM Plot |
| LGG | rs11009251 | chr10:33434232 | G/T | 0 | 406 | 15.03 | 18.03 | 5.93 | KM Plot |
| LGG | rs11009254 | chr10:33435992 | C/T | 0 | 405 | 15.03 | 18.4 | 5.93 | KM Plot |
| LGG | rs11009257 | chr10:33442663 | T/A | 0 | 394 | 14.92 | 18.63 | 6.47 | KM Plot |
| LGG | rs11024771 | chr11:2987089 | C/A | 0.000168 | 398 | 15.6 | 13.7 | 11.8 | KM Plot |
| LGG | rs11024772 | chr11:2987286 | A/G | 0.000168 | 398 | 15.6 | 13.7 | 11.8 | KM Plot |
| LGG | rs11038666 | chr11:45837371 | G/T | 2.65E-9 | 406 | 3.77 | 15.15 | 15.57 | KM Plot |
| LGG | rs11038669 | chr11:45839398 | G/A | 5.53E-9 | 407 | 3.77 | 15.17 | 15.37 | KM Plot |
| LGG | rs11071196 | chr15:31873806 | G/A | 0.000137 | 406 | 15.17 | 15.45 | 12.4 | KM Plot |
| LGG | rs11075096 | chr16:12655176 | C/G | 0.00019 | 407 | 15.17 | 15.75 | 11.9 | KM Plot |
| LGG | rs11086142 | chr20:61479137 | G/A | 4.56E-6 | 394 | 15.63 | 16.27 | 5.5 | KM Plot |
| LGG | rs11089116 | chr21:45583567 | G/C | 7.79E-5 | 405 | 4.98 | 16.08 | 15.37 | KM Plot |
| LGG | rs11089274 | chr22:19390804 | T/C | 2.12E-9 | 405 | 15.33 | 14.53 | 3.2 | KM Plot |